PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G011700.1
Common NamePHAVU_005G011700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 874aa    MW: 99618.4 Da    PI: 7.3771
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G011700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.11.1e-26119221191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                         +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+            +e++  +r+ ++t+Cka+++vk++ dgkw+++
  Phvul.005G011700.1 119 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdSENSTGRRSCSKTDCKASMHVKRRADGKWVIH 209
                         5*******************************************9999***999887665556669999********************** PP

                FAR1  80 kleleHnHelap 91 
                         ++++eHnHel p
  Phvul.005G011700.1 210 SFVKEHNHELLP 221
                         *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-24119221IPR004330FAR1 DNA binding domain
PfamPF105514.9E-30318410IPR018289MULE transposase domain
PROSITE profilePS509669.371598634IPR007527Zinc finger, SWIM-type
PfamPF044348.2E-5606632IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-6609636IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MVNTLCRQRV LYQLNVVSST LETTEPKALI MDIDLRLPSG EHDKEDEETT TIDNMLDSEE  60
KLHNGGIDGR NIVEAGIEVH ALNGGDLNSP TVDIVMFKED TNLEPLSGME FESHGEAYSF  120
YQEYARSMGF NTAIQNSRRS KTSREFIDAK FACSRYGTKR EYDKSFNRPR ARQNKQDSEN  180
STGRRSCSKT DCKASMHVKR RADGKWVIHS FVKEHNHELL PAQAVSEQTR RMYAAMARQF  240
AEYKTVVGLK NEKNPFDKGR NLGLESGEAK IMLDFFIQMQ NMNSNFFYAV DLGEDQRLRN  300
LLWIDAKSRN DYINFCDVVS FDTTYVRNKY KMPLALFVGV NQHYQFTLLG CALISDESAA  360
TFSWLFRTWL KGVGGQVPKV IITDHDKTLK SVISDIFPNS SHCVCLWHVL GKVSENLAPV  420
IKKHENFMAK FEKCIYRSLT SDDFEKRWWK IVDKCELRED ECMQSLYEDR KLWAPTFMKD  480
VFLGGMSTVQ RSESVNSFFD KYVHKKTSVQ DFVKQYESIL QDRYEEEAKA DSDTWNKLAT  540
LKTPSPLEKS VAGIFTHAVF KKIQAEVVGA VACHPKADRQ DETTTVHRVH DMETNKDFFV  600
VVNQVKFELS CICRLFEYRG YLCRHALIVL QYSGQSVFPS QYILKRWTKD AKLRNIIGEE  660
SEHMLSRVQR YNDLCQRSLK LSEEGSLSQE SYSIAFHALH EAHKSCVSVN NSSKSPTEAG  720
TSGAHGQLST EEDTQSRNMS KSNKKKNPTK KKKVNSEAEV MTVGALDNLQ QMEKFSTRAA  780
VTLEGYYGTQ QSVQGMLNLM GPTRDDYYGN QQTLQGLGPI SSIPTSHDGY YGAHQGIPGL  840
AQLDFLRTGF TYSIRDDPNV RATQLHEDPS RHA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877010.0KM587701.1 Glycine max clone GmFHY3 FHY3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148758.10.0hypothetical protein PHAVU_005G011700g
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLV7BRX50.0V7BRX5_PHAVU; Uncharacterized protein
STRINGGLYMA06G47210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3